R-universe - tsl-zz (Dan MacLean)

peppwR - Power Analysis for Phosphopeptide Abundance Hypothesis Test

Estimate best fit distributions and do power analysis for hypothesis tests on phosphopeptide abundance data.

Last updated

phosphoproteomicsphosphoproteomics-dataproteomicsproteomics-data-analysis

5.10 score 18 scripts 458 downloads

pepdiff - Differential Abundance Analysis for Phosphoproteomics Data

Provides tools for analyzing differential abundance in proteomics experiments. Implements S3 classes for data management and supports Generalized Linear Models (GLM; Nelder and Wedderburn (1972) <doi:10.2307/2344614>), Aligned Rank Transform (ART; Wobbrock et al. (2011) <doi:10.1145/1978942.1978963>), and pairwise test methods for statistical analysis. Includes visualization functions for Principal Component Analysis (PCA), volcano plots, and heatmaps.

Last updated

3.88 score 25 scripts 161 downloads

besthr - Generating Bootstrap Estimation Distributions of HR Data

Creates plots showing scored HR experiments and plots of distribution of means of ranks of HR score from bootstrapping.

Last updated

2.00 score 8 scripts 601 downloads