To cite package ‘pepdiff’ in publications use:

  MacLean D (2026). _pepdiff: Differential Abundance Analysis for
  Phosphoproteomics Data_. R package version 1.0.0,
  <https://CRAN.R-project.org/package=pepdiff>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {pepdiff: Differential Abundance Analysis for Phosphoproteomics Data},
    author = {Dan MacLean},
    year = {2026},
    note = {R package version 1.0.0},
    url = {https://CRAN.R-project.org/package=pepdiff},
  }