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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "pepdiff" in publications use:'
type: software
license: MIT
title: 'pepdiff: Differential Abundance Analysis for Phosphoproteomics Data'
version: 1.0.0
doi: 10.32614/CRAN.package.pepdiff
abstract: Provides tools for analyzing differential abundance in proteomics experiments.
  Implements S3 classes for data management and supports Generalized Linear Models
  (GLM; Nelder and Wedderburn (1972) <https://doi.org/10.2307/2344614>), Aligned Rank
  Transform (ART; Wobbrock et al. (2011) <https://doi.org/10.1145/1978942.1978963>),
  and pairwise test methods for statistical analysis. Includes visualization functions
  for Principal Component Analysis (PCA), volcano plots, and heatmaps.
authors:
- family-names: MacLean
  given-names: Dan
  email: dan.maclean@tsl.ac.uk
repository: https://tsl-zz.r-universe.dev
commit: f6eca2d6d2d03f4de22082e3eaa0da030447f14a
date-released: '2026-04-02'
contact:
- family-names: MacLean
  given-names: Dan
  email: dan.maclean@tsl.ac.uk